主要论文列表（*通讯或共同通讯）
1. Yongfei Hu, Yuanyuan Zhu, Guangjue Tang, Ming Shan, Puwen Tan, Ying Yi, Xiyuan Zhang, Man Liu, Xinyu Li, Le Wu, Jia Chen, Hailong Zheng, Yan Huang, Zhuan Li*, Xiaobo Li*, Dong Wang*（王栋）. Accurate Transcription Factor Activity Inference to Decipher Cell Identity from Single-Cell Transcriptomic Data with MetaTF. Adv Sci (Weinh). 2025. 12(23):e10745. (SCI, IF=14.1, 小类1区）
2. Yongfei Hu, Xinyu Li, Ying Yi, Yan Huang*, Guangyu Wang*, Dong Wang*（王栋）. Deep learning-driven survival prediction in pan-cancer studies by integrating multimodal histology-genomic data. Brief Bioinform. 2025. 26(2):bbaf121. (SCI, IF=7.7, 小类1区）
3. Ying Yi, Yongfei Hu, Juanjuan Kang, Qifa Liu, Yan Huang*, Dong Wang*（王栋）. Biological Data Resources and Machine Learning Frameworks for Hematology Research. Genom Proteom Bioinf. 2025. 23(2):qzaf021. (SCI, IF=7.9）
4. Le Wu, Luqi Wang, Shijie Hu, Guangjue Tang, Jia Chen, Ying Yi, Hailong Xie,Jiahao Lin, Mei Wang, Dong Wang*（王栋）, Bin Yang*, Yan Huang*. RNALocate v3.0: Advancing the Repository of RNA Subcellular Localization with Dynamic Analysis and Prediction. Nucleic Acids Res. 2025. 53(D1):D284-D292. (SCI, IF=13.1）
5. Hailong Zheng, Linfu Xu, Hailong Xie, Jiajing Xie, Yapeng Ma, Yongfei Hu, Le Wu, Jia Chen, Meiyi Wang, Ying Yi, Yan Huang, Dong Wang*（王栋）. RIscoper 2.0: A deep learning tool to extract RNA biomedical relation sentences from literature. Comput Struct Biotechnol J. 2024. 23:1469-1476. (SCI, IF=4.1）
6. Fanqi Zhou, Puwen Tan, Siqi Liu, Le Chang, Jiabin Yang, Mengyao Sun, Yuehong Guo, Yanmin Si, Dong Wang*（王栋）, Jia Yu*, Yanni Ma*. Subcellular RNA distribution and its change during human embryonic stem cell differentiation. Stem Cell Reports. 2024. 19(1):126-140. (SCI, IF=5.1）
7. Jia Chen, Jiahao Lin, Yongfei Hu, Meijun Ye, Linhui Yao, Le Wu, Wenhai Zhang, Meiyi Wang, Tingting Deng, Feng Guo, Yan Huang, Bofeng Zhu*, Dong Wang*（王栋）. RNADisease v4.0: an updated resource of RNA-associated diseases, providing RNA-disease analysis, enrichment and prediction. Nucleic Acids Res. 2023. 51(D1):D1397-D1404. (SCI, IF=14.9）
8. Tianyuan Liu, Bohao Zou, Manman He, Yongfei Hu, Yiying Dou, Tianyu Cui, Puwen Tan, Shaobin Li, Shuan Rao, Yan Huang, Sixi Liu*, Kaican Cai*, Dong Wang*（王栋）. LncReader: identification of dual functional long noncoding RNAs using a multi-head self-attention mechanism. Brief Bioinform.2023. 24(1):bbac579. (SCI, IF=9.5, 小类1区)
9. Tianyu Cui, Yiying Dou, Puwen Tan, Zhen Ni, Tianyuan Liu, DuoLin Wang, Yan Huang, Kaican Cai, Xiaoyang Zhao, Dong Xu*, Hao Lin*, Dong Wang*（王栋）. RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. Nucleic Acids Res. 2022. 50(D1):D333-D339. (SCI, IF=14.9)
10. Fang Wang, Puwen Tan, Pengcheng Zhang, Yue Ren, Jie Zhou, Yunqiao Li, Siyuan Hou, Shuaili Li, Linlin Zhang, Yanni Ma, Chaojie Wang, Wanbo Tang, Xiaoshuang Wang, Yue Huo, Yongfei Hu, Tianyu Cui, Chao Niu, Dong Wang*（王栋）, Bing Liu*, Yu Lan*, Jia Yu*. Single-cell architecture and functional requirement of alternative splicing during hematopoietic stem cell formation. Sci Adv. 2022. 8(1):eabg5369. (SCI, IF=13.6, 小类1区)
11. Juanjuan Kang, Qiang Tang, Jun He, Le Li, Nianling Yang, Shuiyan Yu, Mengyao Wang, Yuchen Zhang, Jiahao Lin, Tianyu Cui, Yongfei Hu, Puwen Tan, Jun Cheng, Hailong Zheng, Dong Wang*（王栋）, Xi Su*, Wei Chen*, Yan Huang*. RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. Nucleic Acids Res. 2022. 50(D1):D326-D332. (SCI, IF=14.9, ESI高被引论文)
12. Jingyuan Tong, Ting Sun, Shihui Ma, Yanhong Zhao, Mankai Ju, Yuchen Gao, Ping Zhu, Puwen Tan, Rongfeng Fu, Anqi Zhang, Ding Wang, Di Wang, Zhijian Xiao, Jiaxi Zhou, Renchi Yang, Stephen Loughran, Juan Li, Anthony R. Green, Emery H. Bresnick, Dong Wang*（王栋）, Tao Cheng*, Lei Zhang*, Lihong Shi*. Hematopoietic stem cell heterogeneity is linked to the initiation and therapeutic response of myeloproliferative neoplasms. Cell Stem Cell. 2021. 28(3):502-513. (SCI, IF=23.9, 小类1区）
13. Lin Ning, Tianyu Cui, Boyang Zheng, Nuo Wang, Jiaxin Luo, Beilei Yang, Mengze Du, Jun Cheng, Yiying Dou, Dong Wang*（王栋）. MNDR v3.0: mammal ncRNA-disease repository with increased coverage and annotation. Nucleic Acids Res. 2021. 49(D1):D160-D164. (SCI, IF=14.9, ESI高被引论文)
14. Yang Zhang, Tianyuan Liu, Jing Wang, Bohao Zou, Le Li, Linhui Yao, Kechen Chen, Lin Ning, Bingyi Wu*, Xiaoyang Zhao*, Dong Wang*（王栋）. Cellinker: a platform of ligand-receptor interactions for intercellular communication analysis. Bioinformatics. 2021. 37(14):2025-2032. (SCI, IF=5.8）
15. Yang Zhang*, Tianyuan Liu, Xuesong Hu, Mei Wang, Jing Wang, Bohao Zou, Puwen Tan, Tianyu Cui, Yiying Dou, Lin Ning, Yan huang, Shuan Rao, Dong Wang*（王栋）, Xiaoyang Zhao*. CellCall: integrating paired ligand-receptor and transcription factor activities for cell-cell communication. Nucleic Acids Res. 2021. 49(15):8520-8534. (SCI, IF=14.9, ESI高被引论文)
16. Xue Wang, Changyun Ping, Puwen Tan, Chenguang Sun, Guang Liu, Tao Liu, Shuchun Yang, Yanmin Si, Lijun Zhao, Yongfei Hu, Yuyan Jia, Xiaoshuang Wang, Meili Zhang, Fang Wang, Dong Wang*（王栋）, Jia Yu*, Yanni Ma*and Yue Huang*. hnRNPLL controls pluripotency exit of embryonic stem cells by modulating alternative splicing of Tbx3 and Bptf. EMBO J. 2021. 40(4):e104729. (SCI, IF=11.4, 小类1区）
17. Duolin Wang, Zhaoyue Zhang, Yuexu Jiang, Ziting Mao, Dong Wang*（王栋）, Hao Lin*, Dong Xu*. DM3Loc: Multi-label mRNA Subcellular Localization Prediction and Analysis Based on Multi-head Self-attention Mechanism. Nucleic Acids Res. 2021. 49(8):e46. (SCI, IF=14.9, ESI高被引论文)
18. ZhaoYue Zhang, YuHe Yang, Hui Ding, Dong Wang*（王栋）, Wei Chen*, Hao Lin*. Design powerful predictor for mRNA subcellular location prediction in Homo sapiens. Brief Bioinform. 2021. 22(1):526-535. (SCI, IF=9.5, 小类1区, ESI高被引论文)
19. Yunqing Lin, Tianyuan Liu, Tianyu Cui, Zhao Wang, Yuncong Zhang, Puwen Tan, Yan Huang, Jia Yu, Dong Wang*（王栋）. RNAInter in 2020: RNA interactome repository with increased coverage and annotation. Nucleic Acids Res. 2020. 48(D1):D189-197. (SCI, IF=14.9, ESI高被引论文)
20. Yang Zhang, Tianyuan Liu, Liqun Chen, Jinxurong Yang, Jiayi Yin, Yuncong Zhang, Zhixi Yun, Hao Xu, Lin Ning, Fengbiao Guo, Yongshuai Jiang, Hao Lin, Dong Wang*（王栋）, Yan Huang*, Jian Huang*. RIscoper: a tool for RNA-RNA interaction extraction from the literature. Bioinformatics. 2019. 35(17):3199-3202. (SCI, IF=5.8）
21. Tianyu Cui, Lin Zhang, Yan Huang, Ying Yi, Puwen Tan, Yue Zhao, Yongfei Hu, Liyan Xu*, Enmin Li*, Dong Wang*（王栋）. MNDR v2.0: an updated resource of ncRNA–disease associations in mammals. Nucleic Acids Res. 2018. 46(D1):D371-D374. (SCI, IF=14.9, ESI高被引论文)
22. Yan Huang, Puwen Tan, Xiaoshuang Wang, Ying Yi, Yongfei Hu*, Dong Wang*（王栋）, Fang Wang*. Transcriptomic insights into temporal expression pattern of autophagy genes during monocytic and granulocytic differentiation. Autophagy. 2018. 14(3): 558-559. (SCI, IF=13.3）
23. Ying Yi, Yue Zhao, Chunhua Li, Lin Zhang, Huiying Huang, Yana Li, Lanlan Liu, Ping Hou, Tianyu Cui, Puwen Tan, Yongfei Hu, Ting Zhang, Yan Huang, Xiaobo Li*, Jia Yu*, Dong Wang*（王栋）. RAID v2.0: an updated resource of RNA-associated interactions across organisms. Nucleic Acids Res. 2017. 45(D1):D115-D118. (SCI, IF=14.9, ESI高被引论文)
24. Yongfei Hu, Yan Huang, Ying Yi, Hongwei Wang, Bing Liu*, Jia Yu*, Dong Wang*（王栋）. Single cell RNA sequencing highlights transcription activity of autophagy-related genes during haematopoietic stem cell formation in mouse embryos. Autophagy. 2017. 13(4): 770-771. (SCI, IF=13.3）
25. Hongmei Zhao, Xiaoshuang Wang, Ping Yi, Yanmin Si, Puwen Tan, Jinrong He, Shan Yu, Yue Ren, Yanni Ma, Junwu Zhang, Dong Wang*（王栋）, Fang Wang*, Jia Yu*. KSRP specifies monocytic and granulocytic differentiation through regulating miR-129 biogenesis and RUNX1 expression. Nat Commun. 2017. 8(1):1428. (SCI, IF=16.6, 小类1区）
26. Deng Wu, Yan Huang, Juanjuan Kang, Kongning Li, Xiaoman Bi, Ting Zhang, Nana Jin, Yongfei Hu, Puwen Tan, Lu Zhang, Ying Yi, Wenjun Shen, Jian Huang, Xiaobo Li, Xia Li*, Jianzhen Xu*, Dong Wang*（王栋）. ncRDeathDB: a comprehensive bioinformatics resource for deciphering network organization of the ncRNA-mediated cell death system. Autophagy. 2015. 11(10): 1917-1926. (SCI, IF=13.3）